EnrichR

Functional Enrichment Analysis and Network Construction

PS: EnrichR are not supported any more. Please use the richR(“https://www.github.com/guokai8/richR“)

Description

EnrichR is a package can be used for functional enrichment analysis and network construction based on enrichment analysis results. It supported almost all species pubished by ENSEMBL and included with Bioconductor. Now the EnrichR provide function to direct download annotation dataset from the MsigDB.

Dependencies

R>2.15

Installation

library(devtools)    
install_github("guokai8/EnrichR")

Getting started

library(EnrichR)

More detail please see vignette

vignette("EnrichR")

Some useful commands

If you want tranform ID from one type another type(“SYMBOL”->”ENSEMBL”)

idconvert(keys=vector_of_symbols,species="human",fkeytype= "SYMBOL",tkeytype="ENSEMBL")

If you want have more details include input data and enrichment results

getdetail(enrichres,input_data)

Contact information

I still working on this package and will add more functions here.
For any questions please contact guokai8@gmail.com