项目作者： shivChitinous
项目描述 ：
calculating radii of gyration of proteins from .pdb files
高级语言： Jupyter Notebook
项目地址: git://github.com/shivChitinous/rad-gyres.git
rad-gyres
Check out protein structures here!
Visualizing centre of masses and radii of gyration for some proteins in the protein data bank (PDB).
read_process_PDB and radii_gyration.ipynb contain scripts for the following:
- Downloading and parsing
.pdb files - Plotting positions of skeletal atoms
- Plotting all atoms
- Plotting C and N termini
- Calculating and plotting centre of mass
- Calculating and plotting radius of gyration
References:
- Lobanov, M.Y., Bogatyreva, N.S. & Galzitskaya, O.V. Radius of gyration as an indicator of protein structure compactness. Mol Biol 42, 623–628 (2008).
- Rob Phillips, Jane Kondev, Julia Theriot, and Hernan G. Garcia. 1960. Physical Biology of the Cell. Second Edition.
- Chaitanya Athale’s Cellular Biophysics Course at IISER Pune
GitHub
