Custom analysis of in vitro circadian proteomics and phosphoproteomics using multiple sets of 10plex TMT with two genotypes
Custom analysis of in vitro circadian timecourse proteomics and phosphoproteomics experiments. This code accompanies the manuscript published in The EMBO Journal. Please see this paper for context and experimental design. The code in this repository was not designed to be run on other datasets, and is made public for transparency.
R 4.0.3
(R 4.1.1 was used for the new validation experiment)
This code is released with the MIT License.