A sage package for working with circular genomes represented by signed or unsigned permutations.
A sage package for working with circular genomes represented by signed or unsigned permutations. It includes tools for converting between representations as well as visualisations using matplotlib.
To install and use this package, paste the following command in your terminal
sage -pip install cgt
and use import cgt in a sage script or environment.
If you would like to contribute to cgt, please see CONTRIBUTING.md for how to get set up.
If you use this software in your work, please cite it use the citation function on the github page or see CITATION.cff
Note: you will need to at least have Sage version 9.0 installed. If you aren’t sure how to do this, see the installation instructions in INSTALL.md.