项目作者: jibikbam

项目描述 :
Preprocess and analyze DTI (3D medical image)
高级语言: Matlab
项目地址: git://github.com/jibikbam/DTI-process-analysis.git
创建时间: 2017-04-04T17:31:12Z
项目社区:https://github.com/jibikbam/DTI-process-analysis

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DTI process and analysis

This section is for those who deal with Diffusion weighted MR images.

DTI preprocess (bash script) requires FSL libraries. Please download and install FSL (https://fsl.fmrib.ox.ac.uk/fsldownloads/fsldownloadmain.html).

DTI analysis (matlab script) requires a library to read and write NIFTI files. You can download the library from https://www.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and-analyze-image .

Pipeline:

  • process_DTI.sh
  • TBSS
    1) tbss_1_preproc *nii.gz
    2) tbss_2_reg -T
    3) tbss_3_postreg -S
    4) tbss_4_prestats 0.2
    5) other optional processes
  • analysisX_XXXX.m