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项目作者： fperraudeau

项目描述 ：
Bioconductor2017研讨会 - 单细胞RNA-seq数据分析：归一化，降维，聚类和谱系推断
高级语言：
项目地址: git://github.com/fperraudeau/bioc2017singlecell.git
创建时间： 2017-07-11T07:48:07Z
项目社区：https://github.com/fperraudeau/bioc2017singlecell
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BioC 2017 workshop

Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage inference

Fanny Perraudeau (@fperraudeau) Davide Risso (@drisso), and Kelly Street (@kstreet13)

This repository contains the code and data needed for the workshop.

The workshop is divided into five main parts:

  1. Pre-processing: scone
  2. Normalization and dimensionality reduction: zinbwave
  3. Cell clustering: clusterExperiment
  4. Cell lineage and pseudotime inference: slingshot
  5. Differential expression analysis along lineages

A very similar version of the workflow is available at https://f1000research.com/articles/6-1158/v1