svSupport

This is a tool to calculate allele frequency of structural variants using a .bam file as input and allowing for the adjustment of allele frequencies based on tumour purity.

svSupport is under constant development. Please feel free to contact me, or raise an issue if you encounter any problems.

Installation

• Create clean environment with conda

  pip install conda
  conda create -n svSupport python==2.7.12
  conda activate svSupport

• Install from github

  git clone https://github.com/nriddiford/svSupport.git
  cd svSupport
  pip install .

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