生产运营/行业运营>> yack>> 返回
项目作者： arriam-lab2

项目描述 ：
fast and lightweight counting of short k-mers
高级语言： Python
项目地址: git://github.com/arriam-lab2/yack.git
创建时间： 2017-12-06T18:19:09Z
项目社区：https://github.com/arriam-lab2/yack
开源协议：MIT License
下载


yack

Yack is yet another k-mer counter, designed for fast and lightweight counting of short k-mers (up to 31bp).

Install

  1. pip install yack

or install this from the github:

  1. wget https://github.com/arriam-lab2/yack/archive/v0.1.2.tar.gz
  2. tar xzf v0.1.2.tar.gz
  3. rm v0.1.2.tar.gz
  4. cd yack-0.1.2
  5. python setup.py install

Usage

CLI application

  1. yack count -k 25 INPUT_FILE --hist

API

See examples folder for an example of usage yack as a python module.