项目作者: dhimmel

项目描述 :
User-friendly Gene Ontology annotations
高级语言: Jupyter Notebook
项目地址: git://github.com/dhimmel/gene-ontology.git
创建时间: 2015-03-06T21:55:01Z
项目社区:https://github.com/dhimmel/gene-ontology

开源协议:

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User-friendly Gene Ontology annotations

DOI

This project provides easy-to-use Gene Ontology annotations. Annotations relate GO Terms with Entrez Genes. We provide genes as Entrez GeneIDs and as symbols.

Users choose from the following options:

  • species: which species to retrieve annotations for
  • evidence: whether to use all annotations or annotations from experimental evidence only
  • propagation: whether to include only direct annotations or infer annotations based on ontology structure

The project includes a website for browsing and downloading annotation files.

Execution

sh code/run.sh > log.txt downloads the latest input resources and rebuilds the annotation data.