Web server for all differential expression (DE) callers
shinyDE is an R Shiny web server for all differential expression (DE) callers. Currently, shinyDE supports edgeR, DESeq2, baySeq, NOISeq, SAMSeq, DEGseq, EBSeq, and PoissonSeq. Users can run multiple DE callers in parallel and observe mutual overlaps of statistical results called in common between, e.g., edgeR and DESeq2, which can then further be sorted by p-value, FDR, etc. shinyDE also supports heatmaps, gene ontology analyses, and Venn diagrams.
Note: this package is alpha stage, expect (lots of) bugs and changes.
Coming soon!
shinyDE is financially supported by the United States Department of Defense (DoD) through the National Defense Science and Engineering Graduate Fellowship (NDSEG) Program. This research was conducted with Government support under and awarded by DoD, Army Research Office (ARO), National Defense Science and Engineering Graduate (NDSEG) Fellowship, 32 CFR 168a.