项目作者: Hoohm

项目描述 :
A tool that allows to get UMI counts from a single cell protein assay
高级语言: Python
项目地址: git://github.com/Hoohm/CITE-seq-Count.git
创建时间: 2017-08-07T20:32:40Z
项目社区:https://github.com/Hoohm/CITE-seq-Count

开源协议:MIT License

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DOI

CITE-seq-Count

A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.

IMPORTANT NEWS

There was a major bug in version 1.3.4 of CITE-seq-Count. The results were in read counts and not in UMI counts.

This is fixed in version 1.4.0 or above. Please rerun your data as this might provide a cleaner result for your data.

Here is the website referencing the wetlab protocols needed https://cite-seq.com/

Installation

  1. pip install CITE-seq-Count==1.4.5

The official documentation can be found here