Simple fastq read and base counter in Rust
Simple fastq read and base counter for paired data.
conda install fastq-count
Running the counter is as simple as:
fastq-count r1.fq r2.fq
Fastq files may be gzip compressed. When they are, their filenames must end in.gz.
fastq-count returns a simple json, with schema:
{"reads": {"type": "integer"},"bases": {"type": "integer"}}
MIT