Calculates Kn/Ks distances from two CDS sequences
Calculates Kn/Ks distances from two CDS sequences.
This program will read two aligned CDS sequences (see CodonAlign) and measure synonymous (Ks) and nonsynonymous (Kn) distances applying K80 and JC correction for hidden mutations.
A nice feature is that you can specify any codon table by using the --codon_table argument, which will be retrieved from the NCBI translation table website.