AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
title: “README”
author: “Jingw Yang”
date: “2018/01/30”
AnceTran is an R package that performs analyses of transcriptome evolution
based on RNA-seq expression data or ChIP-seq TF binding data, including optimized input formatting, normalization
and pair-wise distance evaluation, transcriptome character tree construction and ancestral
transcriptome state inference.
AnceTran package is under active developing, current developing version 2.0 is available at https://github.com/jingwyang/AnceTran.
A convenient way to install package from github is through devtools package:
```{r, eval=FALSE}
install.packages(‘devtools’)
devtools::install_github(“jingwyang/AnceTran”)
Users can also download *AnceTran* package and install locally through:```{r, eval=FALSE}install.packages("filePath/AnceTran.2.0.tar.gz", repos = NUll, type = "source")