A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
This repository contains the Biowdl
workflow usable for processing RNA-seq data. This workflow will
performs QC (including adapter clipping), mapping, variant-calling
and expression quantification.
Documentation for this workflow can be
found here.
This workflow is part of Biowdl developed by the
SASC team at Leiden University Medical Center.
For any question related to RNA-seq, please use the
github issue tracker
or contact the SASC team directly at:
sasc@lumc.nl.