项目作者: gis-rpd

项目描述 :
A customisable FastQ Demuxer
高级语言: Nim
项目地址: git://github.com/gis-rpd/fluidemux.git
创建时间: 2019-02-01T07:18:22Z
项目社区:https://github.com/gis-rpd/fluidemux

开源协议:MIT License

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rpd-fluidemux

Project specific FastQ demultiplexer. Of limited general use, but existing code can be easily
changed according to needs. Contains plenty of hardcoded assumptions, e.g. barcodes are of length 6
and names start with “ROW”. Provided barcodes come from the Fluidigm C1 mRNA Seq HT Demultiplex
Script
.

Building

Install nim. Then run nimble build

Usage

  1. $ ./fluidemux -h
  2. Usage:
  3. main [required&optional-params]
  4. Options(opt-arg sep :|=|spc):
  5. -h, --help write this help to stdout
  6. -1=, --fastq1= string REQUIRED FastQ1
  7. -2=, --fastq2= string REQUIRED FastQ2
  8. -b=, --barcodeYaml= string REQUIRED YAML file with barcodes to name mapping
  9. -o=, --outpref= string REQUIRED Output prefix